TiME Publications

2024

  • Emon, B., Joy, M. S. H., Lalonde, L., Ghrayeb, A., Doha, U., Ladehoff, L., Brockstein, R., Saengow, C., Ewoldt, R. H., & Saif, M. T. A. (2024). Nuclear deformation regulates YAP dynamics in cancer associated fibroblasts. Acta Biomaterialia, 173, 93–108. https://doi.org/10.1016/j.actbio.2023.11.015
  • Jeong, Y., Ahmad, S., & Irudayaraj, J. (2024). Dynamic Effect of β-Lactam Antibiotic Inactivation Due to the Inter- and Intraspecies Interaction of Drug-Resistant Microbes. ACS Biomaterials Science and Engineering, 10(3), 1461–1472. https://doi.org/10.1021/acsbiomaterials.3c01678
  • Sorrells, J. E., Park, J., Aksamitiene, E., Marjanovic, M., Martin, E. M., Chaney, E. J., Higham, A. M., Cradock, K. A., Liu, Z. G., & Boppart, S. A. (2024). Label-free nonlinear optical signatures of extracellular vesicles in liquid and tissue biopsies of human breast cancer. Scientific Reports, 14(1). https://doi.org/10.1038/s41598-024-55781-4
  • Yang, L., Iyer, R. R., Sorrells, J. E., Renteria, C. A., & Boppart, S. A. (2024). Temporally optimized and spectrally shaped hyperspectral coherent anti-Stokes Raman scattering microscopy. Optics Express, 32(7), 11474. https://doi.org/10.1364/oe.517417
  • Zambuto, S. G., Jain, I., Theriault, H. S., Underhill, G. H., & Harley, B. A. C. (2024). Cell Chirality of Micropatterned Endometrial Microvascular Endothelial Cells. Advanced Healthcare Materials. https://doi.org/10.1002/adhm.202303928

2023

  • Applegate, C. C., Nelappana, M. B., Nielsen, E. A., Kalinowski, L., Dobrucki, I. T., & Dobrucki, L. W. (2023). RAGE as a Novel Biomarker for Prostate Cancer: A Systematic Review and Meta-Analysis. Cancers, 15(19). https://doi.org/10.3390/cancers15194889
  • Arif, W., Mathur, B., Saikali, M. F., Chembazhi, U. v., Toohill, K., Song, Y. J., Hao, Q., Karimi, S., Blue, S. M., Yee, B. A., van Nostrand, E. L., Bangru, S., Guzman, G., Yeo, G. W., Prasanth, K. v., Anakk, S., Cummins, C. L., & Kalsotra, A. (2023). Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-35932-3
  • Bhatta, R., Han, J., Liu, Y., Bo, Y., Lee, D., Zhou, J., Wang, Y., Nelson, E. R., Chen, Q., Zhang, X. S., Hassaneen, W., & Wang, H. (2023). Metabolic tagging of extracellular vesicles and development of enhanced extracellular vesicle based cancer vaccines. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-43914-8
  • Bhatta, R., Han, J., Liu, Y., Bo, Y., & Wang, H. (2023). T cell-responsive macroporous hydrogels for in situ T cell expansion and enhanced antitumor efficacy. Biomaterials, 293. https://doi.org/10.1016/j.biomaterials.2022.121972
  • Chembazhi, U. V., Tung, W. S., Hwang, H., Wang, Y., Lalwani, A., Nguyen, K. L., Bangru, S., Yee, D., Chin, K., Yang, J., Kalsotra, A., & Mei, W. (2023). PTBP1 controls intestinal epithelial regeneration through post-transcriptional regulation of gene expression. Nucleic Acids Research, 51(5), 2397–2414. https://doi.org/10.1093/nar/gkad042
  • Han, J., Bhatta, R., Liu, Y., Bo, Y., Elosegui-Artola, A., & Wang, H. (2023). Metabolic glycan labeling immobilizes dendritic cell membrane and enhances antitumor efficacy of dendritic cell vaccine. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-40886-7
  • Han, J., Bhatta, R., & Wang, H. (2023). Bio-adhesive Macroporous Hydrogels for In Situ Recruitment and Modulation of Dendritic Cells. Cellular and Molecular Bioengineering, 16(4), 355–367. https://doi.org/10.1007/s12195-023-00770-2
  • Hsieh, P.-H., Phal, Y., Prasanth, K. v, & Bhargava, R. (2023). Cell Phase Identification in a Three-Dimensional Engineered Tumor Model by Infrared Spectroscopic Imaging. Analytical Chemistry, 95(6), 3349–3357. https://doi.org/10.1021/acs.analchem.2c04554
  • Jeong, Y., & Irudayaraj, J. (2023). Hierarchical encapsulation of bacteria in functional hydrogel beads for inter- and intra- species communication. Acta Biomaterialia, 158, 203–215. https://doi.org/10.1016/j.actbio.2023.01.003
  • Jeong, Y., Vyas, K., & Irudayaraj, J. (2023). Toxicity of per- and polyfluoroalkyl substances to microorganisms in confined hydrogel structures. Journal of Hazardous Materials, 456. https://doi.org/10.1016/j.jhazmat.2023.131672
  • Kim, Y., Yang, Y., Zhang, X., Li, Z., Vázquez-Guardado, A., Park, I., Wang, J., Efimov, A. I., Dou, Z., Wang, Y., Park, J., Luan, H., Ni, X., Kim, Y. S., Baek, J., Park, J. J., Xie, Z., Zhao, H., Gazzola, M., … Bashir, R. (2023). Remote control of muscle-driven miniature robots with battery-free wireless optoelectronics. Science Robotics, 8(74). https://doi.org/10.1126/scirobotics.add1053
  • Louie, A. Y., Kim, J. S., Drnevich, J., Dibaeinia, P., Koito, H., Sinha, S., McKim, D. B., Soto-Diaz, K., Nowak, R. A., Das, A., & Steelman, A. J. (2023). Influenza A virus infection disrupts oligodendrocyte homeostasis and alters the myelin lipidome in the adult mouse. Journal of Neuroinflammation, 20(1). https://doi.org/10.1186/s12974-023-02862-2
  • McCallister, T. X., Lim, C. K. W., Terpstra, W. M., Alejandra Zeballos C, M., Zhang, S., Powell, J. E., & Gaj, T. (2023). A high-fidelity CRISPR-Cas13 system improves abnormalities associated with C9ORF72-linked ALS/FTD. BioRxiv : The Preprint Server for Biology. https://doi.org/10.1101/2023.12.12.571328
  • Ostadi Moghaddam, A., Arshee, M. R., Lin, Z., Sivaguru, M., Phillips, H., McFarlin, B. L., Toussaint, K. C., & Wagoner Johnson, A. J. (2023a). An indentation-based framework for probing the glycosaminoglycan-mediated interactions of collagen fibrils. Journal of the Mechanical Behavior of Biomedical Materials, 140. https://doi.org/10.1016/j.jmbbm.2023.105726
  • Ostadi Moghaddam, A., Arshee, M. R., Lin, Z., Sivaguru, M., Phillips, H., McFarlin, B. L., Toussaint, K. C., & Wagoner Johnson, A. J. (2023b). Orientation-dependent indentation reveals the crosslink-mediated deformation mechanisms of collagen fibrils. Acta Biomaterialia, 158, 347–357. https://doi.org/10.1016/j.actbio.2023.01.005
  • Park, J., Sorrells, J. E., Chaney, E. J., Abdelrahman, A. M., Yonkus, J. A., Leiting, J. L., Nelson, H., Harrington, J. J., Aksamitiene, E., Marjanovic, M., Groves, P. D., Bushell, C., Truty, M. J., & Boppart, S. A. (2023). In vivo label-free optical signatures of chemotherapy response in human pancreatic ductal adenocarcinoma patient-derived xenografts. Communications Biology, 6(1). https://doi.org/10.1038/s42003-023-05368-y
  • Piersma, S. J., Bangru, S., Yoon, J., Liu, T. W., Yang, L., Hsieh, C. S., Plougastel-Douglas, B., Kalsotra, A., & Yokoyama, W. M. (2023). NK cell expansion requires HuR and mediates control of solid tumors and long-term virus infection. Journal of Experimental Medicine, 220(11). https://doi.org/10.1084/jem.20231154
  • Santaliz-Casiano, A., Mehta, D., Danciu, O. C., Patel, H., Banks, L., Zaidi, A., Buckley, J., Rauscher, G. H., Schulte, L., Weller, L. R., Taiym, D., Liko-Hazizi, E., Pulliam, N., Friedewald, S. M., Khan, S., Kim, J. J., Gradishar, W., Hegerty, S., Frasor, J., … Madak-Erdogan, Z. (2023). Identification of metabolic pathways contributing to ER+ breast cancer disparities using a machine-learning pipeline. Scientific Reports, 13(1). https://doi.org/10.1038/s41598-023-39215-1
  • Sengupta, S., & Anastasio, M. A. (2023). A Test Statistic Estimation-based Approach for Establishing Self-interpretable CNN-based Binary Classifiers. IEEE Transactions on Medical Imaging. https://doi.org/10.1109/TMI.2023.3348699
  • Zeballos C, M. A., Moore, H. J., Smith, T. J., Powell, J. E., Ahsan, N. S., Zhang, S., & Gaj, T. (2023a). Mitigating a TDP-43 proteinopathy by targeting ataxin-2 using RNA-targeting CRISPR effector proteins. BioRxiv : The Preprint Server for Biology. https://doi.org/10.1101/2023.04.07.536072
  • Zeballos C, M. A., Moore, H. J., Smith, T. J., Powell, J. E., Ahsan, N. S., Zhang, S., & Gaj, T. (2023b). Mitigating a TDP-43 proteinopathy by targeting ataxin-2 using RNA-targeting CRISPR effector proteins. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-42147-z

2022

  • Chen, J. W. E., Leary, S., Barnhouse, V., Sarkaria, J. N., & Harley, B. A. C. (2022). Matrix Hyaluronic Acid and Hypoxia Influence a CD133+Subset of Patient-Derived Glioblastoma Cells. Tissue Engineering – Part A, 28(7–8), 330–340. https://doi.org/10.1089/TEN.TEA.2021.0117
  • Fathi, P., Roslend, A., Alafeef, M., Moitra, P., Dighe, K., Esch, M. B., & Pan, D. (2022). In Situ Surface-Directed Assembly of 2D Metal Nanoplatelets for Drug-Free Treatment of Antibiotic-Resistant Bacteria. Advanced Healthcare Materials, 11(19). https://doi.org/10.1002/ADHM.202102567
  • Gilchrist, A. E., & Harley, B. A. C. (2022). Engineered Tissue Models to Replicate Dynamic Interactions within the Hematopoietic Stem Cell Niche. Advanced Healthcare Materials, 11(7). https://doi.org/10.1002/ADHM.202102130
  • Hu, C., He, S., Lee, Y. J., He, Y., Kong, E. M., Li, H., Anastasio, M. A., & Popescu, G. (2022). Live-dead assay on unlabeled cells using phase imaging with computational specificity. Nature Communications, 13(1). https://doi.org/10.1038/S41467-022-28214-X
  • Iyer, R. R., Liu, Y. Z., Renteria, C. A., Tibble, B. E., Choi, H., Žurauskas, M., & Boppart, S. A. (2022). Ultra-parallel label-free optophysiology of neural activity. IScience, 25(5). https://doi.org/10.1016/J.ISCI.2022.104307
  • Iyer, R. R., Renteria, C. A., Yang, L., Sorrells, J. E., Park, J., Sun, L., Yu, Z., Huang, Y., Marjanovic, M., Mirica, L. M., & Boppart, S. A. (2022). Tracking the binding of multi-functional fluorescent tags for Alzheimer’s disease using quantitative multiphoton microscopy. Journal of Biophotonics, 15(9). https://doi.org/10.1002/JBIO.202200105
  • Iyer, R. R., Sorrells, J. E., Yang, L., Chaney, E. J., Spillman, D. R., Tibble, B. E., Renteria, C. A., Tu, H., Žurauskas, M., Marjanovic, M., & Boppart, S. A. (2022). Label-free metabolic and structural profiling of dynamic biological samples using multimodal optical microscopy with sensorless adaptive optics. Scientific Reports, 12(1). https://doi.org/10.1038/S41598-022-06926-W
  • Kenkel, S., Gryka, M., Chen, L., Confer, M. P., Rao, A., Robinson, S., Prasanth, K. v., & Bhargava, R. (2022). Chemical imaging of cellular ultrastructure by null-deflection infrared spectroscopic measurements. Proceedings of the National Academy of Sciences of the United States of America, 119(47). https://doi.org/10.1073/pnas.2210516119
  • Lee, M. H., Applegate, C. C., Shaffer, A. L., Emamaddin, A., Erdman, J. W., & Nakamura, M. T. (2022). A feasibility study to test a novel approach to dietary weight loss with a focus on assisting informed decision making in food selection. PLoS ONE, 17(5 May). https://doi.org/10.1371/JOURNAL.PONE.0267876
  • Lim, C. K. W., McCallister, T. X., Saporito-Magriña, C., McPheron, G. D., Krishnan, R., Zeballos C, M. A., Powell, J. E., Clark, L. v., Perez-Pinera, P., & Gaj, T. (2022). CRISPR base editing of cis-regulatory elements enables the perturbation of neurodegeneration-linked genes. Molecular Therapy, 30(12), 3619–3631. https://doi.org/10.1016/J.YMTHE.2022.08.008
  • Moghaddam, A. O., Lin, Z., Sivaguru, M., Phillips, H., McFarlin, B. L., Toussaint, K. C., & Johnson, A. J. W. (2022). Heterogeneous microstructural changes of the cervix influence cervical funneling. Acta Biomaterialia, 140, 434–445. https://doi.org/10.1016/J.ACTBIO.2021.12.025
  • Pastrana-Otero, I., Majumdar, S., Gilchrist, A. E., Harley, B. A. C., & Kraft, M. L. (2022). Identification of the Differentiation Stages of Living Cells from the Six Most Immature Murine Hematopoietic Cell Populations by Multivariate Analysis of Single-Cell Raman Spectra. Analytical Chemistry, 94(35), 11999–12007. https://doi.org/10.1021/acs.analchem.2c00714
  • Peng, J., Serrano, G., Traniello, I. M., Calleja-Cervantes, M. E., Chembazhi, U. v., Bangru, S., Ezponda, T., Rodriguez-Madoz, J. R., Kalsotra, A., Prosper, F., Ochoa, I., & Hernaez, M. (2022). SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes. Communications Biology, 5(1). https://doi.org/10.1038/S42003-022-03319-7
  • Powell, J. E., Lim, C. K. W., Krishnan, R., McCallister, T. X., Saporito-Magriña, C., Zeballos, M. A., McPheron, G. D., & Gaj, T. (2022). Targeted gene silencing in the nervous system with CRISPR-Cas13. Science Advances, 8(3). https://doi.org/10.1126/SCIADV.ABK2485
  • Sonam, S., Bangru, S., Perry, K. J., Chembazhi, U. v., Kalsotra, A., & Henry, J. J. (2022). Cellular and molecular profiles of larval and adult Xenopus corneal epithelia resolved at the single-cell level. Developmental Biology, 491, 13–30. https://doi.org/10.1016/j.ydbio.2022.08.007
  • Sullivan, K. M., Ko, E., Kim, E. M., Ballance, W. C., Ito, J. D., Chalifoux, M., Kim, Y. J., Bashir, R., & Kong, H. (2022). Extracellular Microenvironmental Control for Organoid Assembly. Tissue Engineering – Part B: Reviews, 28(6), 1209–1222. https://doi.org/10.1089/TEN.TEB.2021.0186
  • Zambuto, S. G., Jain, I., Clancy, K. B. H., Underhill, G. H., & Harley, B. A. C. (2022). Role of Extracellular Matrix Biomolecules on Endometrial Epithelial Cell Attachment and Cytokeratin 18 Expression on Gelatin Hydrogels. ACS Biomaterials Science and Engineering, 8(9), 3819–3830. https://doi.org/10.1021/acsbiomaterials.2c00247
  • Zambuto, S. G., Rattila, S., Dveksler, G., & Harley, B. A. C. (2022). Effects of Pregnancy-Specific Glycoproteins on Trophoblast Motility in Three-Dimensional Gelatin Hydrogels. Cellular and Molecular Bioengineering, 15(2), 175–191. https://doi.org/10.1007/S12195-021-00715-7
  • Zuo, Q., Mogol, A. N., Liu, Y. J., Casiano, A. S., Chien, C., Drnevich, J., Imir, O. B., Kulkoyluoglu-Cotul, E., Park, N. H., Shapiro, D. J., Park, B. H., Ziegler, Y., Katzenellenbogen, B. S., Aranda, E., O’Neill, J. D., Raghavendra, A. S., Tripathy, D., & Erdogan, Z. M. (2022). Targeting Metabolic Adaptations in the Breast Cancer–Liver Metastatic Niche Using Dietary Approaches to Improve Endocrine Therapy Efficacy. Molecular Cancer Research, 20(6), 923–937. https://doi.org/10.1158/1541-7786.MCR-21-0781

2021

  • Applegate, C. C., Lowerison, M. R., Hambley, E., Song, P., Wallig, M. A., & Erdman, J. W. (2021). Dietary tomato inhibits angiogenesis in TRAMP prostate cancer but is not protective with a Western-style diet in this pilot study. Scientific Reports, 11(1). https://doi.org/10.1038/S41598-021-97539-2
  • Berg, I. C., Mohagheghian, E., Habing, K., Wang, N., & Underhill, G. H. (2021). Microtissue Geometry and Cell-Generated Forces Drive Patterning of Liver Progenitor Cell Differentiation in 3D. Advanced Healthcare Materials, 10(12). https://doi.org/10.1002/ADHM.202100223
  • Bower, A. J., Renteria, C., Li, J., Marjanovic, M., Barkalifa, R., & Boppart, S. A. (2021). High-speed label-free two-photon fluorescence microscopy of metabolic transients during neuronal activity. Applied Physics Letters, 118(8). https://doi.org/10.1063/5.0031348
  • Chembazhi, U. v., Bangru, S., Hernaez, M., & Kalsotra, A. (2021). Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver. Genome Research, 31(4), 576–591. https://doi.org/10.1101/GR.267013.120
  • Emon, B., Li, Z., Joy, M. S. H., Doha, U., Kosari, F., & Saif, M. A. T. (2021). A novel method for sensor-based quantification of single/multicellular force dynamics and stiffening in 3D matrices. Science Advances, 7(15). https://doi.org/10.1126/SCIADV.ABF2629
  • Emon, M. A. B., Knoll, S., Doha, U., Ladehoff, L., Lalonde, L., Baietto, D., Sivaguru, M., Bhargava, R., & Saif, M. T. A. (2021). Dose-independent threshold illumination for non-invasive time-lapse fluorescence imaging of live cells. Extreme Mechanics Letters, 46. https://doi.org/10.1016/J.EML.2021.101249
  • Fathi, P., Roslend, A., Mehta, K., Moitra, P., Zhang, K., & Pan, D. (2021). UV-trained and metal-enhanced fluorescence of biliverdin and biliverdin nanoparticles. Nanoscale, 13(9), 4785–4798. https://doi.org/10.1039/D0NR08485A
  • Ganguli, A., Mostafa, A., Saavedra, C., Kim, Y., Le, P., Faramarzi, V., Feathers, R. W., Berger, J., Ramos-Cruz, K. P., Adeniba, O., Diaz, G. J. P., Drnevich, J., Wright, C. L., Hernandez, A. G., Lin, W., Smith, A. M., Kosari, F., Vasmatzis, G., Anastasiadis, P. Z., & Bashir, R. (2021). Three-dimensional microscale hanging drop arrays with geometric control for drug screening and live tissue imaging. Science Advances, 7(17). https://doi.org/10.1126/SCIADV.ABC1323
  • Gilchrist, A. E., Serrano, J. F., Ngo, M. T., Hrnjak, Z., Kim, S., & Harley, B. A. C. (2021). Encapsulation of murine hematopoietic stem and progenitor cells in a thiol-crosslinked maleimide-functionalized gelatin hydrogel. Acta Biomaterialia, 131, 138–148. https://doi.org/10.1016/J.ACTBIO.2021.06.028
  • Hu, C., Kandel, M. E., Lee, Y. J., & Popescu, G. (2021). Synthetic aperture interference light (SAIL) microscopy for high-throughput label-free imaging. Applied Physics Letters, 119(23). https://doi.org/10.1063/5.0065628
  • Ngo, M. T., Barnhouse, V. R., Gilchrist, A. E., Mahadik, B. P., Hunter, C. J., Hensold, J. N., Petrikas, N., & Harley, B. A. C. (2021). Hydrogels Containing Gradients in Vascular Density Reveal Dose-Dependent Role of Angiocrine Cues on Stem Cell Behavior. Advanced Functional Materials, 31(51). https://doi.org/10.1002/ADFM.202101541
  • Rathnamalala, C. S. L., Pino, N. W., Herring, B. S., Hooper, M., Gwaltney, S. R., Chan, J., & Scott, C. N. (2021). Thienylpiperidine Donor NIR Xanthene-Based Dye for Photoacoustic Imaging. Organic Letters, 23(19), 7640–7644. https://doi.org/10.1021/ACS.ORGLETT.1C02862
  • Richbourg, N. R., Wancura, M., Gilchrist, A. E., Toubbeh, S., Harley, B. A. C., Cosgriff-Hernandez, E., & Peppas, N. A. (2021). Precise control of synthetic hydrogel network structure via linear, independent synthesis-swelling relationships. Science Advances, 7(7). https://doi.org/10.1126/SCIADV.ABE3245
  • Zambuto, S. G., Clancy, K. B. H., & Harley, B. A. C. (2021). Tuning Trophoblast Motility in a Gelatin Hydrogel via Soluble Cues from the Maternal-Fetal Interface. Tissue Engineering – Part A, 27(15–16), 1064–1073. https://doi.org/10.1089/TEN.TEA.2020.0097
  • Zeballos C., M. A., & Gaj, T. (2021). Next-Generation CRISPR Technologies and Their Applications in Gene and Cell Therapy. Trends in Biotechnology, 39(7), 692–705. https://doi.org/10.1016/J.TIBTECH.2020.10.010
  • Zhao, H., Kim, Y., Wang, H., Ning, X., Xu, C., Suh, J., Han, M., Pagan-Diaz, G. J., Lu, W., Li, H., Bai, W., Aydin, O., Park, Y., Wang, J., Yao, Y., He, Y., Saif, M. T. A., Huang, Y., Bashir, R., & Rogers, J. A. (2021). Compliant 3D frameworks instrumented with strain sensors for characterization of millimeter-scale engineered muscle tissues. Proceedings of the National Academy of Sciences of the United States of America, 118(19). https://doi.org/10.1073/PNAS.2100077118

2020

  • Adeniba, O. O., Corbin, E. A., Ganguli, A., Kim, Y., & Bashir, R. (2020). Simultaneous time-varying viscosity, elasticity, and mass measurements of single adherent cancer cells across cell cycle. Scientific Reports, 10(1). https://doi.org/10.1038/S41598-020-69638-Z
  • Alex, A., Chaney, E. J., Žurauskas, M., Criley, J. M., Spillman, D. R., Hutchison, P. B., Li, J., Marjanovic, M., Frey, S., Arp, Z., & Boppart, S. A. (2020). In vivo characterization of minipig skin as a model for dermatological research using multiphoton microscopy. Experimental Dermatology, 29(10), 953–960. https://doi.org/10.1111/EXD.14152
  • Bangru, S., & Kalsotra, A. (2020). Cellular and molecular basis of liver regeneration. Seminars in Cell and Developmental Biology, 100, 74–87. https://doi.org/10.1016/J.SEMCDB.2019.12.004
  • Bauer, J., Emon, M. A. B., Staudacher, J. J., Thomas, A. L., Zessner-Spitzenberg, J., Mancinelli, G., Krett, N., Saif, M. T., & Jung, B. (2020). Increased stiffness of the tumor microenvironment in colon cancer stimulates cancer associated fibroblast-mediated prometastatic activin A signaling. Scientific Reports, 10(1). https://doi.org/10.1038/S41598-019-55687-6
  • Chen, J. W. E., Lumibao, J., Leary, S., Sarkaria, J. N., Steelman, A. J., Gaskins, H. R., & Harley, B. A. C. (2020). Crosstalk between microglia and patient-derived glioblastoma cells inhibit invasion in a three-dimensional gelatin hydrogel model. Journal of Neuroinflammation, 17(1). https://doi.org/10.1186/S12974-020-02026-6
  • Fathi, P., Capron, G., Tripathi, I., Misra, S., Ostadhossein, F., Selmic, L., Rowitz, B., & Pan, D. (2020). Computed tomography-guided additive manufacturing of Personalized Absorbable Gastrointestinal Stents for intestinal fistulae and perforations. Biomaterials, 228. https://doi.org/10.1016/J.BIOMATERIALS.2019.119542
  • Fathi, P., & Pan, Di. (2020). Current trends in pyrrole and porphyrin-derived nanoscale materials for biomedical applications. Nanomedicine, 15(25), 2493–2515. https://doi.org/10.2217/NNM-2020-0125
  • Gilchrist, A. E., & Harley, B. A. C. (2020). Connecting secretome to hematopoietic stem cell phenotype shifts in an engineered bone marrow niche. Integrative Biology , 12(7), 175–187. https://doi.org/10.1093/INTBIO/ZYAA013
  • Hedhli, J., Kim, M. W., Knox, H. J., Cole, J. A., Huynh, T., Schuelke, M., Dobrucki, I. T., Kalinowski, L., Chan, J., Sinusas, A. J., Insana, M. F., & Dobrucki, L. W. (2020). Imaging the landmarks of vascular recovery. Theranostics, 10(4), 1733–1745. https://doi.org/10.7150/THNO.36022
  • Hyun, J., Sun, Z., Ahmadi, A. R., Bangru, S., Chembazhi, U. v., Du, K., Chen, T., Tsukamoto, H., Rusyn, I., Kalsotra, A., & Diehl, A. M. (2020). Epithelial splicing regulatory protein 2-mediated alternative splicing reprograms hepatocytes in severe alcoholic hepatitis. Journal of Clinical Investigation, 130(4), 2129–2145. https://doi.org/10.1172/JCI132691
  • Kenkel, S., Mittal, S., & Bhargava, R. (2020). Closed-loop atomic force microscopy-infrared spectroscopic imaging for nanoscale molecular characterization. Nature Communications, 11(1). https://doi.org/10.1038/S41467-020-17043-5
  • Kim, Y., Pagan-Diaz, G., Gapinske, L., Kim, Y., Suh, J., Solomon, E., Harris, J. F., Nam, S. W., & Bashir, R. (2020). Integration of Graphene Electrodes with 3D Skeletal Muscle Tissue Models. Advanced Healthcare Materials, 9(4). https://doi.org/10.1002/ADHM.201901137
  • Le, P., Vaidya, R., Smith, L. D., Han, Z., Zahid, M. U., Winter, J., Sarkar, S., Chung, H. J., Perez-Pinera, P., Selvin, P. R., & Smith, A. M. (2020). Optimizing Quantum Dot Probe Size for Single-Receptor Imaging. ACS Nano, 14(7), 8343–8358. https://doi.org/10.1021/ACSNANO.0C02390
  • Leong, J., Hong, Y. T., Wu, Y. F., Ko, E., Dvoretskiy, S., Teo, J. Y., Kim, B. S., Kim, K., Jeon, H., Boppart, M., Yang, Y. Y., & Kong, H. (2020). Surface Tethering of Inflammation-Modulatory Nanostimulators to Stem Cells for Ischemic Muscle Repair. ACS Nano, 14(5), 5298–5313. https://doi.org/10.1021/ACSNANO.9B04926
  • Liu, Y.-Z., Renteria, C., Courtney, C. D., Ibrahim, B., You, S., Chaney, E. J., Barkalifa, R., Iyer, R. R., Zurauskas, M., Tu, H., Llano, D. A., Christian-Hinman, C. A., & Boppart, S. A. (2020). Simultaneous two-photon activation and imaging of neural activity based on spectral–temporal modulation of supercontinuum light. Neurophotonics, 7(04). https://doi.org/10.1117/1.NPH.7.4.045007
  • Long, K. D., Woodburn, E. v., Berg, I. C., Chen, V., & Scott, W. S. (2020). Measurement of filtration efficiencies of healthcare and consumer materials using modified respirator fit tester setup. PLoS ONE, 15(10 October). https://doi.org/10.1371/JOURNAL.PONE.0240499
  • Misra, C., Bangru, S., Lin, F., Lam, K., Koenig, S. N., Lubbers, E. R., Hedhli, J., Murphy, N. P., Parker, D. J., Dobrucki, L. W., Cooper, T. A., Tajkhorshid, E., Mohler, P. J., & Kalsotra, A. (2020). Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy. Developmental Cell, 52(6), 748-763.e6. https://doi.org/10.1016/J.DEVCEL.2020.01.037
  • Pastrana-Otero, I., Majumdar, S., Gilchrist, A. E., Gorman, B. L., Harley, B. A. C., & Kraft, M. L. (2020). Development of an inexpensive Raman-compatible substrate for the construction of a microarray screening platform. Analyst, 145(21), 7030–7039. https://doi.org/10.1039/D0AN01153C
  • Renteria, C., Liu, Y. Z., Chaney, E. J., Barkalifa, R., Sengupta, P., & Boppart, S. A. (2020). Dynamic Tracking Algorithm for Time-Varying Neuronal Network Connectivity using Wide-Field Optical Image Video Sequences. Scientific Reports, 10(1). https://doi.org/10.1038/S41598-020-59227-5
  • Renteria, C., Suárez, J., Licudine, A., & Boppart, S. A. (2020). Depixelation and enhancement of fiber bundle images by bundle rotation. Applied Optics, 59(2), 536. https://doi.org/10.1364/AO.59.000536
    Rowles, J. L., Smith, J. W., Applegate, C. C., Miller, R. J., Wallig, M. A., Kaur, A., Sarol, J. N., Musaad, S., Clinton, S. K., O’Brien, W. D., & Erdman, J. W. (2020). Dietary Tomato or Lycopene Do Not Reduce Castration-Resistant Prostate Cancer Progression in a Murine Model. Journal of Nutrition, 150(7), 1808–1817. https://doi.org/10.1093/JN/NXAA107
  • Sarkar, S., Le, P., Geng, J., Liu, Y., Han, Z., Zahid, M. U., Nall, D., Youn, Y., Selvin, P. R., & Smith, A. M. (2020). Short-Wave Infrared Quantum Dots with Compact Sizes as Molecular Probes for Fluorescence Microscopy. Journal of the American Chemical Society, 142(7), 3449–3462. https://doi.org/10.1021/JACS.9B11567
  • Schnell, M., Mittal, S., Falahkheirkhah, K., Mittal, A., Yeh, K., Kenkel, S., Kajdacsy-Balla, A., Carney, P. S., & Bhargava, R. (2020). All-digital histopathology by infrared-optical hybrid microscopy. Proceedings of the National Academy of Sciences of the United States of America, 117(7), 3388–3396. https://doi.org/10.1073/PNAS.1912400117
  • Srivastava, I., Misra, S. K., Bangru, S., Boateng, K. A., Soares, J. A. N. T., Schwartz-Duval, A. S., Kalsotra, A., & Pan, D. (2020). Complementary Oligonucleotide Conjugated Multicolor Carbon Dots for Intracellular Recognition of Biological Events. ACS Applied Materials and Interfaces, 12(14), 16137–16149. https://doi.org/10.1021/ACSAMI.0C02463
  • SUN, Q., HAO, Q., LIN, Y. C., SONG, Y. J., BANGRU, S., ARIF, W., TRIPATHI, V., ZHANG, Y., CHO, J. H., FREIER, S. M., JENKINS, L. M., MA, J., YOON, J. H., KALSOTRA, A., LAL, A., PRASANTH, S. G., & PRASANTH, K. v. (2020). Antagonism between splicing and microprocessor complex dictates the serum-induced processing of lnc-MIRHG for efficient cell cycle reentry. RNA, 26(11), 1603–1620. https://doi.org/10.1261/RNA.075309.120
  • Teo, J. Y., Ko, E., Leong, J., Hong, J., Jeon, J. S., Yang, Y. Y., & Kong, H. (2020). Surface tethering of stromal cell-derived factor-1α carriers to stem cells enhances cell homing to ischemic muscle. Nanomedicine: Nanotechnology, Biology, and Medicine, 28. https://doi.org/10.1016/J.NANO.2020.102215

2019

  • Le, P., Lim, S.J., Baculis, B.C. et al. Counting growth factors in single cells with infrared quantum dots to measure discrete stimulation distributions. Nat Commun 10, 909 (2019) doi:10.1038/s41467-019-08754-5
  • Gilchrist AE, Lee S, Hu Y, Harley BAC. Soluble Signals and Remodeling in a Synthetic Gelatin-Based Hematopoietic Stem Cell Niche. Adv Healthc Mater. 2019;8(20):e1900751. Epub 2019/09/19. doi: 10.1002/adhm.201900751.
  • Applegate CC, Rowles JL, 3rd, Erdman JW, Jr. Can Lycopene Impact the Androgen Axis in Prostate Cancer?: A Systematic Review of Cell Culture and Animal Studies. Nutrients. 2019;11(3). Epub 2019/03/17. doi: 10.3390/nu11030633.
  • Zhou EY, Knox HJ, Liu C, Zhao W, Chan J. A Conformationally Restricted Aza-BODIPY Platform for Stimulus-Responsive Probes with Enhanced Photoacoustic Properties. Journal of the American Chemical Society. 2019;141(44):17601-9. doi: 10.1021/jacs.9b06694.
  • Chen M, Knox HJ, Tang Y, Liu W, Nie L, Chan J, et al. Simultaneous photoacoustic imaging of intravascular and tissue oxygenation. Optics Letters. 2019;44(15):3773-6. doi: 10.1364/OL.44.003773.
  • Kaylan KB, Berg IC, Biehl MJ, Brougham-Cook A, Jain I, Jamil SM, et al. Spatial patterning of liver progenitor cell differentiation mediated by cellular contractility and Notch signaling. Elife. 2018;7. Epub 2018/12/28. doi: 10.7554/eLife.38536.
  • Berg IC, Underhill GH. High Throughput Traction Force Microscopy for Multicellular Islands on Combinatorial Microarrays. Bio-protocol. 2019;9(21):e3418. doi: 10.21769/BioProtoc.3418.
  • Elhebeary M, Emon MAB, Aydin O, Saif MTA. A novel technique for in situ uniaxial tests of self-assembled soft biomaterials. Lab on a Chip. 2019;19(7):1153-61. doi: 10.1039/C8LC01273C.
  • Fathi P, Capron G, Tripathi I, Misra S, Ostadhossein F, Selmic L, et al. Computed tomography-guided additive manufacturing of Personalized Absorbable Gastrointestinal Stents for intestinal fistulae and perforations. Biomaterials. 2020;228:119542. Epub 2019/11/05. doi: 10.1016/j.biomaterials.2019.119542.
  • Yang Y, Fathi P, Holland G, Pan D, Wang NS, Esch MB. Pumpless microfluidic devices for generating healthy and diseased endothelia. Lab on a Chip. 2019;19(19):3212-9. doi: 10.1039/C9LC00446G.
  • Fathi P, Knox HJ, Sar D, Tripathi I, Ostadhossein F, Misra SK, et al. Biodegradable Biliverdin Nanoparticles for Efficient Photoacoustic Imaging. ACS Nano. 2019;13(7):7690-704. doi: 10.1021/acsnano.9b01201.
  • Seimetz J, Arif W, Bangru S, Hernaez M, Kalsotra A. Cell-type specific polysome profiling from mammalian tissues. Methods. 2019;155:131-9. doi: 10.1016/j.ymeth.2018.11.015
  • Moody L, Dvoretskiy S, An R, Mantha S, Pan Y-X. The Efficacy of miR-20a as a Diagnostic and Prognostic Biomarker for Colorectal Cancer: A Systematic Review and Meta-Analysis. Cancers. 2019;11(8):1111. doi: 10.3390/cancers11081111.
  • Munroe M, Dvoretskiy S, Lopez A, Leong J, Dyle MC, Kong H, et al. Pericyte transplantation improves skeletal muscle recovery following hindlimb immobilization. Faseb j. 2019;33(6):7694-706. Epub 2019/04/26. doi: 10.1096/fj.201802580R.
  • Srivastava I, Khamo JS, Pandit S, Fathi P, Huang X, Cao A, Haasch RT, Nie S, Zhang K, and Pan D. Influence of electron acceptor and electron donor on the photophysical properties of carbon dots: a comparative investigation at the bulk-state and single-particle level. Advanced Functional Materials, vol. 29, no. 37, p. 1902466, 2019/09/01 2019, doi: 10.1002/adfm.201902466.
  • Richard C, McGee R, Goenka A, Mukherjee P, and Bhargava R. On-demand milifluidic synthesis of quantum dots in digital droplet reactors. Industrial & Engineering Chemistry Research. 2019/11/05 2019, doi: 10.1021/acs.iecr.9b04230.
  • Dvoretskiy, S., Garg, K., Munroe, M., Pincu, Y., Mahmassani, Z. S., Coombs, C., Blackwell, B., Garcia, G., Waterstradt, G., Lee, I., Drnevich, J., Rhodes, J. S., & Boppart, M. D. (2019). The impact of skeletal muscle contraction on CD146+Lin- pericytes. American Journal of Physiology – Cell Physiology, 317(5), C1011–C1024. https://doi.org/10.1152/AJPCELL.00156.2019
  • Grant, L., Raman, R., Cvetkovic, C., Ferrall-Fairbanks, M. C., Pagan-Diaz, G. J., Hadley, P., Ko, E., Platt, M. O., & Bashir, R. (2019). Long-Term Cryopreservation and Revival of Tissue-Engineered Skeletal Muscle. Tissue Engineering – Part A, 25(13–14), 1023–1036. https://doi.org/10.1089/TEN.TEA.2018.0202
  • He, S., Ma, L., Baek, A. E., Vardanyan, A., Vembar, V., Chen, J. J., Nelson, A. T., Burdette, J. E., & Nelson, E. R. (2019). Host CYP27A1 expression is essential for ovarian cancer progression. Endocrine-Related Cancer, 26(7), 659–675. https://doi.org/10.1530/ERC-18-0572
  • Ko, E., Yu, S. J., Pagan-Diaz, G. J., Mahmassani, Z., Boppart, M. D., Im, S. G., Bashir, R., & Kong, H. (2019). Matrix Topography Regulates Synaptic Transmission at the Neuromuscular Junction. Advanced Science, 6(6). https://doi.org/10.1002/ADVS.201801521
  • Pedron, S., Wolter, G. L., Chen, J. W. E., Laken, S. E., Sarkaria, J. N., & Harley, B. A. C. (2019). Hyaluronic acid-functionalized gelatin hydrogels reveal extracellular matrix signals temper the efficacy of erlotinib against patient-derived glioblastoma specimens. Biomaterials, 219. https://doi.org/10.1016/J.BIOMATERIALS.2019.119371
  • Teo, J. Y., Seo, Y., Ko, E., Leong, J., Hong, Y. T., Yang, Y. Y., & Kong, H. (2019). Surface tethering of stem cells with H 2 O 2 -responsive anti-oxidizing colloidal particles for protection against oxidation-induced death. Biomaterials, 201, 1–15. https://doi.org/10.1016/J.BIOMATERIALS.2019.01.039

2018

  • Fathi P, Khamo JS, Huang X, Srivastava I, Esch MB, Zhang K, and Pan D. Bulk-state and single-particle imaging are central to understanding carbon dot photo-physics and elucidating the effects of precursor composition and reaction temperature. Carbon, vol. 145, pp. 572-585, 2019/04/01/ 2019, doi: https://doi.org/10.1016/j.carbon.2018.12.105.
  • Anorma, C., Hedhli, J., Bearrood, T. E., Pino, N. W., Gardner, S. H., Inaba, H., Zhang, P., Li, Y., Feng, D., Dibrell, S. E., Kilian, K. A., Dobrucki, L. W., Fan, T. M., & Chan, J. (2018). Surveillance of Cancer Stem Cell Plasticity Using an Isoform-Selective Fluorescent Probe for Aldehyde Dehydrogenase 1A1. ACS Central Science, 4(8), 1045–1055. https://doi.org/10.1021/ACSCENTSCI.8B00313
  • Bower, A. J., Li, J., Chaney, E. J., Marjanovic, M., Spillman, D. R., & Boppart, S. A. (2018). High-speed imaging of transient metabolic dynamics using two-photon fluorescence lifetime imaging microscopy. Optica, 5(10), 1290. https://doi.org/10.1364/OPTICA.5.001290
  • Chen, J. W. E., Lumibao, J., Blazek, A., Gaskins, H. R., & Harley, B. (2018). Hypoxia activates enhanced invasive potential and endogenous hyaluronic acid production by glioblastoma cells. Biomaterials Science, 6(4), 854–862. https://doi.org/10.1039/C7BM01195D
  • Chen, J. W. E., Pedron, S., Shyu, P., Hu, Y., Sarkaria, J. N., & Harley, B. A. C. (2018). Influence of hyaluronic acid transitions in tumor microenvironment on glioblastoma malignancy and invasive behavior. Frontiers in Materials, 5. https://doi.org/10.3389/FMATS.2018.00039
  • Hedhli, J., Slania, S. L. L., Płoska, A., Czerwinski, A., Konopka, C. J., Wozniak, M., Banach, M., Dobrucki, I. T., Kalinowski, L., & Dobrucki, L. W. (2018). Evaluation of a dimeric-cRGD peptide for targeted PET-CT imaging of peripheral angiogenesis in diabetic mice. Scientific Reports, 8(1). https://doi.org/10.1038/S41598-018-23372-9
  • Kaylan, K. B., Berg, I. C., Biehl, M. J., Brougham-Cook, A., Jain, I., Jamil, S. M., Sargeant, L. H., Cornell, N. J., Raetzman, L. T., & Underhill, G. H. (2018). Spatial patterning of liver progenitor cell differentiation mediated by cellular contractility and Notch signaling. ELife, 7. https://doi.org/10.7554/ELIFE.38536
  • Kenkel, S., Mittal, A., Mittal, S., & Bhargava, R. (2018). Probe-Sample Interaction-Independent Atomic Force Microscopy-Infrared Spectroscopy: Toward Robust Nanoscale Compositional Mapping. Analytical Chemistry, 90(15), 8845–8855. https://doi.org/10.1021/ACS.ANALCHEM.8B00823
    Kim, M., Zhu, Y., Hedhli, J., Dobrucki, L. W., & Insana, M. F. (2018). Multidimensional Clutter Filter Optimization for Ultrasonic Perfusion Imaging. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 65(11), 2020–2029. https://doi.org/10.1109/TUFFC.2018.2868441
  • Knox, H. J., & Chan, J. (2018). Acoustogenic Probes: A New Frontier in Photoacoustic Imaging. Accounts of Chemical Research, 51(11), 2897–2905. https://doi.org/10.1021/ACS.ACCOUNTS.8B00351
    Konopka, C. J., Wozniak, M., Hedhli, J., Ploska, A., Schwartz-Duval, A., Siekierzycka, A., Pan, D., Munirathinam, G., Dobrucki, I. T., Kalinowski, L., & Dobrucki, L. W. (2018). Multimodal imaging of the receptor for advanced glycation end-products with molecularly targeted nanoparticles. Theranostics, 8(18), 5012–5024. https://doi.org/10.7150/THNO.24791
  • Lee, M. K., Clay, N. E., Ko, E., Smith, C. E., Chen, L., Cho, N., Sung, H. J., Dipietro, L., Lee, J., & Kong, H. (2018). Spatial Organization of Superparamagnetic Iron Oxide Nanoparticles in/on Nano/Microsized Carriers Modulates the Magnetic Resonance Signal. Langmuir, 34(50), 15276–15282. https://doi.org/10.1021/ACS.LANGMUIR.8B01477
  • Li, J., Bower, A. J., Arp, Z., Olson, E. J., Holland, C., Chaney, E. J., Marjanovic, M., Pande, P., Alex, A., & Boppart, S. A. (2018). Investigating the healing mechanisms of an angiogenesis-promoting topical treatment for diabetic wounds using multimodal microscopy. Journal of Biophotonics, 11(3). https://doi.org/10.1002/JBIO.201700195
  • Liu, L., Wang, R., Wang, C., Wang, J., Chen, L., & Cheng, J. (2018). Light-triggered release of drug conjugates for an efficient combination of chemotherapy and photodynamic therapy. Biomaterials Science, 6(5), 997–1001. https://doi.org/10.1039/C7BM01114H
  • Liu, Y., Le, P., Lim, S. J., Ma, L., Sarkar, S., Han, Z., Murphy, S. J., Kosari, F., Vasmatzis, G., Cheville, J. C., & Smith, A. M. (2018). Enhanced mRNA FISH with compact quantum dots. Nature Communications, 9(1). https://doi.org/10.1038/S41467-018-06740-X
  • Mittal, S., Yeh, K., Suzanne Leslie, L., Kenkel, S., Kajdacsy-Balla, A., & Bhargava, R. (2018). Simultaneous cancer and tumor microenvironment subtyping using confocal infrared microscopy for all-digital molecular histopathology. Proceedings of the National Academy of Sciences of the United States of America, 115(25), E5651–E5660. https://doi.org/10.1073/PNAS.1719551115
    Wang, R., Cai, K., Wang, H., Yin, C., & Cheng, J. (2018). A caged metabolic precursor for DT-diaphorase-responsive cell labeling. Chemical Communications, 54(38), 4878–4881. https://doi.org/10.1039/C8CC01715H
  • Zhou, E. Y., Knox, H. J., Reinhardt, C. J., Partipilo, G., Nilges, M. J., & Chan, J. (2018). Near-Infrared Photoactivatable Nitric Oxide Donors with Integrated Photoacoustic Monitoring. Journal of the American Chemical Society, 140(37), 11686–11697. https://doi.org/10.1021/JACS.8B05514

2017

  • E. Ko, S. Yu, Z. Mahmassami, M. Boppart, SG Im, R Bashir, H. Kong “Reciprocity between Nanogrooved Substrate-Mediated Muscle Maturity and Neurons toward Neuromuscular Junction Formation”, ACS Nano, 2017. (Under Revision)
  • J. Park, J. Kim, S. Baik, K. Sullivan, E. Ko, M.J. Kim, Y.J. Kim, H. Kong “A Decellularized Matrix Produced by Mesenchymal Stem Cells Modulate Growth and Metabolic Activity of Hepatic Cell Cluster”, ACS Biomaterials Science & Engineering 2017. (In Press)
  • A. Baek,Y.-R. Yu, S. He, S. Wardell, C.-Y. Chang, S. Kwon, R. Pillai, H. McDowell, J.W. Thompson, L. Dubois, P. Sullivan, J. Kemper, D. McDonnell, E.R. Nelson, M. Gunn, “The cholesterol metabolite 27- hydroxycholesterol facilitates breast cancer metastasis through its actions on immune cells”, Nat. Com., 2017. (Accepted)
  • E. Ko, J. Lee, H. Kim, D. Yang, K. Yang, J. Lee, J. Shin, H.S. Yang, W.H. Ryu,  S.W. Cho “Electrospun Silk Fibroin Nanofibrous Scaffolds with Polydopamine-mediated Hydroxyapatite Enrichment for Enhanced Osteogenesis of Human Adipose-derived Stem Cells”, ACS Applied Materials & Interfaces 2017. (In Press)
  • Junmin Lee,  A.A. Abdeen, J. Hedhli, Kathryn L. Wycislo, I.T. Dobrucka, T.M. Fan, L.W. Dobrucki and K.A. Kilian “Melanoma topology reveals a stem like phenotype that promotes angiogenesis.” Science Advances 2017 (accepted).
  • H.J. Knox, J.Hedhli, T.W. Kim, K.Khalili, Lawrence W.L Dobrucki and J. Chan. “A Bioreducible N-oxide-based Probe for Photoacoustic Imaging of Hypoxia.” Nature Communication 2017(accepted).
  • J. Hedhli, C. Konopka, A. Ploska, A. Stawarz, S. Schuh, L. Kalinowski , I.T. Dobrucki, and L.W. Dobrucki “Molecular imaging of tumor microenvironment to study synergistic effects of therapy with doxorubicin and CAMs” MDPI, 2017 (Submitted).
  • J. Hedhli, C. J. Konopka, S. Schuh, H. Bouvin, J. A. Cole, H. D. Huntsman, K. A. Kilian, I. T. Dobrucki, M. D. Boppart, and L. W. Dobrucki. Multimodal assessment of mesenchymal stem cell therapy for diabetic vascular complications. Theranostics, Research Paper vol. 7, no. 16, pp. 3876-3888, 2017, doi: 10.7150/thno.19547.
  • J. Li, A.J. Bower, Z. Arp, E. Olson, C. Holland, E.J. Chaney, M. Marjanovic, P. Pande, A. Alex, S.A. Boppart SA “Investigating the healing mechanisms of an angiogenesis-promoting topical treatment for diabetic wounds using multimodal microscopy,” J. Biophotonics, 2017 doi: 10.1002/jbio.201700195
  • J. Hedhli, A. Czerwinski, M. Schuelke, A. Ploska, P. Sowinski, L. LaHood, S.B. Mamer, P. Czaplewska, I.T. Dobrucki, L. Kalinowski, P.I. Imoukhuede, L.W. Dobrucki “Synthesis, Chemical Characterization and Biological Evaluation of Novel Dimeric-cRGD Peptide for Targeted Imaging of Integrin Activity” Scientific Reports. Jun 9;7(1):3185, 2017. PubMed PMID: 28600529; PubMed Central PMCID: PMC5466598.
  • B.M. DeVetter, S. Kenkel, S. Mittal, R. Bhargava, T.P. Wrobel “Characterization of the structure of low-e substrates and consequences for IR transflection measurements” Vib. Spectrosc. 91, 119-127 (2017). DOI: 10.1016/j.vibspec.2016.09.001
  • E. Chen, S. Pedron, B. Harley, “The combined influence of hydrogel stiffness and matrix-bound hyaluronic acid content on glioma migration”, Macromolecular Bioscience, 2017.
  • H. Wang, H. †, R. Wang,†, K.Cai†, H. He, Y. Liu, J. Yen, Z. Wang, M. Xu, Y. Sun, X. Zhou, Q. Yin, L. Tang, I.T. Dobrucka, L.W. Dobrucki, E. Chaney, S.A. Boppart, T.M. Fan, S. Lezmi, X. Chen, L. Yin, J. Cheng* “Selective In Vivo Metabolic Cell Labeling Mediated Cancer Targeting”, Nature Chemical Biology, 13, 415-424, 2017.(† Equal Contribution)
  • S. He, E.R. Nelson “27-Hydroxycholesterol, an endogenous selective estrogen receptor modulator”, Maturitas, 104: 29-35, 2017. doi: 10.1016/j.maturitas.2017.07.014
  • A.J. Bower, B. Chidester, J. Li, Y. Zhao, M. Marjanovic, E.J. Chaney, M.N. Do, S.A. Boppart “A quantitative framework for the analysis of multimodal optical microscopy images,” Quant. Imaging Med. Surg. 7, 24-37, 2017.
  • J. Lumibao, E. Chen, B. Harley, R. Gaskins “Regulation of bi-organellar CHCHD2 in response to hypoxia is dependent upon EGFR molecular subtype in glioblastoma” Experimental Biology, 2017. Abstract
  • C. Cvetkovic, M.C. Ferrall-Fairbanks, E. Ko, L. Grant, H. Kong, M.P. Platt, R. Bashir “Investigating the Life Expectancy and Proteolytic Degradation of Engineered Skeletal Muscle Biological Machines”, Scientific Report, 7:3775, 2017
  • A.J. Bower, M. Marjanovic, Y. Zhao, J. Li, E.J. Chaney, S.A. Boppart “Label-free in vivo cellular-level detection and imaging of apoptosis” J. Biophotonics, 10, 143-150, 2017.
  • M.Y. Hong, E. Hoh, B. Kang, R. DeHamer R, J.Y. Kim, J. Lumibao “Fish oil contaminated with persistent organic pollutants induces colonic aberrant crypt foci formation and reduces antioxidant enzyme gene expression in rats”. J Nutr., 2017. doi:10.3945/jn.117.251082.
  • K.L Chen , P. Jung , E. Kulkoyluoglu , C. Liguori , J. Lumibao J, et al. “Impact of diet and nutrition on cancer hallmarks” J Cancer Prev Curr Res. 7(3):00240, 2017. doi:10.15406/jcpcr.2017.07.00240.
  • K.J. Mesa, L.E. Selmic, P. Pande, G.L. Monroy, J. Reagan, J. Samuelson, E. Driskell, J. Li, M. Marjanovic, E.J. Chaney, S.A. Boppart, “Intraoperative optical coherence tomography for soft tissue sarcoma differentiation and margin identification,” Laser Surg. Med. 49, 240-248, 2017.
  • J. Park, Y. Yu, J. Kim, E. Qin, M.J. Kim, E. Ko, H. Kong “Balanced effects of surface Reactivity and self-Association of bifunctional polyaspartamide on stem cell adhesion”, ACS Omega, 2(4): 1333-1339, 2017.
  • Ying, H., Yen, J., Wang, R., Lai, Y., Hsu, J. L. A., Hu, Y., & Cheng, J. (2017). Degradable and biocompatible hydrogels bearing a hindered urea bond. Biomaterials Science, 5(12), 2398–2402. https://doi.org/10.1039/C7BM00669A

2016

  • E. Ko, K. Alberti, J.S. Lee, K. Yang, Y. Jin, J.  Shin, H.S. Yang, Q. Xu, S.W. Cho “Nanostructured Tendon-derived Scaffolds for Enhanced Bone Regeneration by Human Adipose-derived Stem Cells”, ACS Applied Materials & Interfaces, 8(35): 22819-22829, 2016.
  • J. Li, Y. Pincu, M. Marjanovic, A.J. Bower, E.J. Chaney, T. Jensen, M.D. Boppart, S.A. Boppart “In vivo evaluation of adipose- and muscle-derived stem cells as a treatment for non-healing diabetic wounds using multimodal microscopy” J. Biomed. Opt. 21, 086006, 2016.
  • J. Wang, L. Yuan, Z. Wang, Md.A. Rahman, Y. Huang, T. Zhu, R. Wang, J. Cheng, C. Wang, F. Chu, C. Tang,* “Photoinduced Metal-Free Atom Transfer Radical Polymerization of Biomass Based Monomers”, Macromolecules, 49, 7709-7717, 2016.
  • R. Wang, J. Zhang, Q. Yin, Y. Xu, J. Cheng*, R. Tong*, “Controlled Ring-Opening Polymerization of O-Carboxyanhydrides Using β-Diiminate Zinc Catalyst”. Angew. Chem. Int. Ed., 55, 13010-13014, 2016.